PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr06160.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family RAV
Protein Properties Length: 340aa    MW: 37927.6 Da    PI: 9.6712
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr06160.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.63e-1355103155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s+ykGV   + +grW A+I++      ++r++lg+f  + eAa+a++ a+++++g
  Dr06160.1  55 SRYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEAEAARAYDTAAQRFRG 103
                78****9888.8*********3.....5**********99*************98 PP
2B31053.8e-33179281198
                EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                f+k+ tpsdv+k++rlv+pk++ae+h     gg++++++ l +ed  g++W+++++y+++s++yvltkGW++Fvk+++L++gD+v F+++   +++l++ 
  Dr06160.1 179 FDKAVTPSDVGKLNRLVIPKQHAEKHfpaqnGGVENKGVLLNFEDAGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLNAGDVVSFHRSTGPDKQLYID 278
                89*****************************99*******************************************************987788889999 PP

                EE- CS
         B3  96 vfr 98 
                ++ 
  Dr06160.1 279 WRP 281
                886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    
MESSCVDDSL SSDSGQLLPV PAPAPLQRAG SGASVVLDPP EASAVEAESR KLPSSRYKGV  60
VPQPNGRWGA QIYEKHQRVW LGTFNEEAEA ARAYDTAAQR FRGRDAVTNF RPLSDSSDDD  120
SAELSFLHSH SKAEIVDMLR KHTYNDELTQ SKRTYGTSGA AKKFYNNGDS SIGAREPLFD  180
KAVTPSDVGK LNRLVIPKQH AEKHFPAQNG GVENKGVLLN FEDAGGKVWR FRYSYWNSSQ  240
SYVLTKGWSR FVKEKNLNAG DVVSFHRSTG PDKQLYIDWR PRATIPVVRP VRPVQVVRLF  300
GVNIFKAPAD MHQENQLKRS REMELLPPNH CFKKPCIGSL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-119RAV family protein