PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr06173.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family M-type_MADS
Protein Properties Length: 244aa    MW: 26895.4 Da    PI: 6.9704
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr06173.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.71.1e-114351849
               HHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
     SRF-TF 18 ngilKKAeELSvLCdaevaviifsstgklyey 49
               +gi+KKA+EL +LC+aev ++ fs+ g+ + +
  Dr06173.1  4 AGIFKKANELAILCGAEVGIVTFSPAGRAFSF 35
               69************************987665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    
MGIAGIFKKA NELAILCGAE VGIVTFSPAG RAFSFGHPNI HSLINRYLPS GNPSTTEDLL  60
LHYPETSYFH GSKLNELQRE HEQLLSLVDA VKKQQQEIKG RLWWDVDIEG LGLDDLIKYV  120
KVLEELKMKV LNITAAKSVH HQHHHHHHPA GYSLVHPAGS VEGLNLHANN VLSGYPHFDG  180
FNERFGWNKG HGVVPAGCSF AATGFDDELK KMEGLHASVV NGFDQRLVNG GSLHGGQSHM  240
SFFN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-21M-type_MADS family protein