PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr06254.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family ERF
Protein Properties Length: 328aa    MW: 35680.8 Da    PI: 4.6205
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr06254.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-18112162155
        AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                ++++GVr+++ +g+++AeIrd +     r  r++lg+f taeeAa  ++ a+ +l+g
  Dr06254.1 112 TRFRGVRRRP-WGKYAAEIRDpW-----RrVRVWLGTFNTAEEAAMVYDSAAIQLRG 162
                589*******.**********88.....55*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    
MDCDFFMPLK RADHVTVVSK PLPFGNLKPG AIPALTACPR TVRISCNDND ATDSSSDEDD  60
CLEILRRGRR YIHEIRFEAR GAAPAVTKST KGSKKKKVAP TPATAPASGG ATRFRGVRRR  120
PWGKYAAEIR DPWRRVRVWL GTFNTAEEAA MVYDSAAIQL RGPDATTNFS RPPAPPPPAR  180
EPANVTSSSG GYESGDESHV LSSPTSVLRN FSSSLNTDPE KHQSAQLPTS DSIPDKDVCG  240
SDSGNVTATV TIPEDLGEFM PFEDVPLYND FLGFGEVEPR IFEDSAQIGL FADGLDDVLP  300
DFGSSTWQVD DYFQDIGDLF PIEPLPAI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.11e-38ERF family protein