PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr06295.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

C3H

Protein Properties

Length: 509aa MW: 55635.9 Da PI: 8.5284

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr06295.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.3	4e-11	147	171	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCk+Gd+CkF H+ Dr06295.1 147 GEKDCAYYMLTRTCKFGDTCKFDHP 171 7889********************9 PP
2	zf-CCCH	29.1	1.7e-09	198	224	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++++t CkyG rCkF+H++ Dr06295.1 198 PGEADCPYYLKTQRCKYGFRCKFNHPK 224 57899********************96 PP
3	zf-CCCH	30.2	7.5e-10	262	282	7	27
SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 7 rffartGtCkyGdrCkFaHgp 27 +f+a+tGtC++G++CkF+H++ Dr06295.1 262 QFYAKTGTCNFGATCKFHHPK 282 59*****************96 PP
4	zf-CCCH	37.1	5.3e-12	325	350	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+f+ +tG CkyG+ C+F+H++ Dr06295.1 325 GESDCPFYIKTGSCKYGAACRFNHPE 350 7889********************96 PP
5	zf-CCCH	39.2	1.2e-12	402	425	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C+f+++tG+Ck+GdrCk+ H+ Dr06295.1 402 QIECDFYMKTGHCKFGDRCKYDHP 425 568********************9 PP
6	zf-CCCH	36	1.1e-11	457	480	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 C ++++tGtCk+G++Ck+ H+p Dr06295.1 457 TVCAYYMKTGTCKFGPTCKYDHPP 480 57********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 509 aa Download sequence
MAYNYGSSYA GTGSASGLSS YSSRHSGAQD PYIPQSATIS SSRYHASDSD ASKYSSSVYV 60 PQSSSDIAAA VKVAASAQAS WGDKLGSASV VDPSSVKRLS ETLYHQTLLG THNSIGQSEA 120 LYSANSLIKR PRLETGSILP IYPQRPGEKD CAYYMLTRTC KFGDTCKFDH PLWVPEGGIP 180 DWKEIPVCHT NEPLPERPGE ADCPYYLKTQ RCKYGFRCKF NHPKDKANAS SVEVLNIVTI 240 LFYLRGPLRQ FVRFFSNSMC AQFYAKTGTC NFGATCKFHH PKDIQIPLTG HVNGHTGYGE 300 LALMYNRASV PALMHNTKGL PIRPGESDCP FYIKTGSCKY GAACRFNHPE RNFAFGSAMF 360 PSAATSLPFG ILNSAANIMQ TIDPRLTQAT LSMAIYPQRP GQIECDFYMK TGHCKFGDRC 420 KYDHPLDRSG SISAANQAGQ LNVKLTLAGL PRREGSTVCA YYMKTGTCKF GPTCKYDHPP 480 PGEAVAKATV HGNQQEEMEN TGEEKTAVV

Sequence ? help Back to Top

Protein Sequence Length: 509 aa Download sequence

MAYNYGSSYA GTGSASGLSS YSSRHSGAQD PYIPQSATIS SSRYHASDSD ASKYSSSVYV  60
PQSSSDIAAA VKVAASAQAS WGDKLGSASV VDPSSVKRLS ETLYHQTLLG THNSIGQSEA  120
LYSANSLIKR PRLETGSILP IYPQRPGEKD CAYYMLTRTC KFGDTCKFDH PLWVPEGGIP  180
DWKEIPVCHT NEPLPERPGE ADCPYYLKTQ RCKYGFRCKF NHPKDKANAS SVEVLNIVTI  240
LFYLRGPLRQ FVRFFSNSMC AQFYAKTGTC NFGATCKFHH PKDIQIPLTG HVNGHTGYGE  300
LALMYNRASV PALMHNTKGL PIRPGESDCP FYIKTGSCKY GAACRFNHPE RNFAFGSAMF  360
PSAATSLPFG ILNSAANIMQ TIDPRLTQAT LSMAIYPQRP GQIECDFYMK TGHCKFGDRC  420
KYDHPLDRSG SISAANQAGQ LNVKLTLAGL PRREGSTVCA YYMKTGTCKF GPTCKYDHPP  480
PGEAVAKATV HGNQQEEMEN TGEEKTAVV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	1e-159	C3H family protein

Link Out ? help Back to Top
Ensembl	Dr06295.1