PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr06488.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

bHLH

Protein Properties

Length: 302aa MW: 33935.4 Da PI: 5.0997

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr06488.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.6	4e-12	135	177	7	54
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk +K++ +iL +++Y+k+L Dr06488.1 135 MAERRRRKRLNDRLSLLRSIVPKI-----TKMDRTSILGDTIDYMKEL 177 89*******************7.....6**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence
MEEVEEQHAF LEELLALRRD TWDLSSFFLP LSTPPPDFFF FSSPPELSTF PPSLPPPPPP 60 SLPPPPSSSS SSFTGFNSTF DSFSQFYQDP ITTPDLHPFS SPPLLTDHCL TDPHPFLVSR 120 SRKRKPDGAP SKNLMAERRR RKRLNDRLSL LRSIVPKITK MDRTSILGDT IDYMKELLER 180 IKNLSEEMAQ FGFDNSKLLN IFKEMNSDDV SVKNSPPKFX VERRDGDTRI EICCTGKPGL 240 LLSTLDSLEV LGLDIQQCVI SCFNDFGLQA SCSEDVEKRS GMACEEIKQA LFRSAGYGGK 300 GL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	122	143	RKRKPDGAPSKNLMAERRRRKR
2	123	144	RKRKPDGAPSKNLMAERRRRKR
3	137	144	ERRRRKRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	7e-55	bHLH family protein

Link Out ? help Back to Top
Ensembl	Dr06488.1