PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr06580.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family C2H2
Protein Properties Length: 436aa    MW: 47765.3 Da    PI: 9.4161
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr06580.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.22.9e-05204226223
                EETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                 C++Cg++F  ++ L++H  + H
  Dr06580.1 204 ICQKCGEVFAKWDGLESHHLSqH 226
                6*****************99877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    
MMEGRRSQRR GERIPTVLWF TLKRSMHCKS EPSEVHDPKF GTKLGSILTK RSVGRSGCSR  60
SIANLKDVIH GSKRHFQRPT SCSPRSIGSS DFLNPISHEV ILSDARCELR IVTSFGGCHE  120
SGTATEVVGT LRPGTPGPGG HLGNFSYNPC GLKSRTTPRR SLQASLESKH GGVSCASSSS  180
TARASVEGEE EKDNNSIGSS TSLICQKCGE VFAKWDGLES HHLSQHAVTE LVEGDSSRKI  240
VEIICRANWL KSESSCGRIE RVLKVHNMQK TLSRFEEYRE MVKLKAGKLP KKHPRCLADG  300
NELLRFHGTT VSCYLGMNGS SSLCTSKNCN VCQILRHGFT XKKKTGPIGV FTTATSGRAF  360
ESIDLSEDDP STRKALLVCR VIAGRVHKPL DNYQELVGQS VFDSLAGKVG PYANIEELYL  420
LNPRALLPCF VVICKP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-149C2H2 family protein