PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr06765.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

C2H2

Protein Properties

Length: 514aa MW: 57339.4 Da PI: 9.3488

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr06765.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.9	4e-06	217	239	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C++Cg+ F r nL+ H r+H Dr06765.1 217 YICEICGQGFQRDQNLQMHRRRH 239 89********************9 PP
2	zf-C2H2	15.2	6.2e-05	304	326	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C Cgk + +s++k H++t+ Dr06765.1 304 WVCARCGKGYAVQSDYKAHLKTC 326 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence
MYHLRGCVAK GIFCDGSRYD GVRRRNALPS LLTRRVEQED EHFDLGKKKK VFTYRLFRDD 60 KRKTIMTHPD DHHIRRRGRG RGRGRGRGVV APVEYVQRNG SSFPFILRNX TACCRFGFXF 120 LCATAVETLG FIARSAIVTG SVIKKISSSS SSSSTTTAAA TTTTTTSIVM YFSSPSPATA 180 SPLSGNPKKK RRPAGTPDPD AEVVALSPKT LLESDRYICE ICGQGFQRDQ NLQMHRRRHK 240 VPWKLVKKDA TESSGGGSSG SEVRKRVYVC PESSCLHHDP AHALGDLVGI KKHFRRKHSA 300 HKQWVCARCG KGYAVQSDYK AHLKTCGTRG HTCDCGRVFS RVESFIEHQD ACMANQACNQ 360 RPSECIELQL LPTCNNTNNI LISSSTPSCY EEEEIATNLK LSIGPEPRGM DEEAKVEKVM 420 ADQARENAKR SMQMAEFEFN NAKRIRQRAQ AELEQALALR QQAFNQINVS MLEITCHACK 480 KRFSSDETSP TAVSYISSVV TEGEGENDNQ NHEP

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence

MYHLRGCVAK GIFCDGSRYD GVRRRNALPS LLTRRVEQED EHFDLGKKKK VFTYRLFRDD  60
KRKTIMTHPD DHHIRRRGRG RGRGRGRGVV APVEYVQRNG SSFPFILRNX TACCRFGFXF  120
LCATAVETLG FIARSAIVTG SVIKKISSSS SSSSTTTAAA TTTTTTSIVM YFSSPSPATA  180
SPLSGNPKKK RRPAGTPDPD AEVVALSPKT LLESDRYICE ICGQGFQRDQ NLQMHRRRHK  240
VPWKLVKKDA TESSGGGSSG SEVRKRVYVC PESSCLHHDP AHALGDLVGI KKHFRRKHSA  300
HKQWVCARCG KGYAVQSDYK AHLKTCGTRG HTCDCGRVFS RVESFIEHQD ACMANQACNQ  360
RPSECIELQL LPTCNNTNNI LISSSTPSCY EEEEIATNLK LSIGPEPRGM DEEAKVEKVM  420
ADQARENAKR SMQMAEFEFN NAKRIRQRAQ AELEQALALR QQAFNQINVS MLEITCHACK  480
KRFSSDETSP TAVSYISSVV TEGEGENDNQ NHEP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	75	85	RRRGRGRGRGR
2	77	86	RGRGRGRGRG
3	77	87	RRRGRGRGRGR
4	79	88	RGRGRGRGRG
5	187	193	PKKKRRP
6	188	192	KKKRR
7	188	193	KKKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	1e-114	C2H2 family protein

Link Out ? help Back to Top
Ensembl	Dr06765.1