PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr07006.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

HB-other

Protein Properties

Length: 946aa MW: 104952 Da PI: 7.1767

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr07006.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	18.2	4.2e-06	80	136	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++R ++++ ++ +++ F + + ++e +e+++ +g+t +qV+ +F +R + +k Dr07006.1 80 KKPRDLLNPKAVKYMQSIFSIKDAIGKKETREISALCGITVTQVREFFAGQRSRVRK 136 7999*************************************************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 946 aa Download sequence
MLGSEMAIVP AISADGSFAE LEGVGDSVES FVRLLETQKE LFHIQIDQLQ KLVVTQCKLT 60 GANPLSQEMA AGALSIKIGK KPRDLLNPKA VKYMQSIFSI KDAIGKKETR EISALCGITV 120 TQVREFFAGQ RSRVRKLTRV SREKVTQSEA SKEPLDVCPI SVEQPLPVAI EAPASLNTVN 180 PMTVQHCQVL ENYGNANATE GGQQVPVNST EVKTAQEGAS CLPQEEAIDG IDSEDKKFLE 240 NIFNLMKKEE TFSGQAKLME WVLQIQNIAV LNWFLTKGGI PILASWLSEA ALEEQSSLLL 300 VLLKVLCHLP LHKVLPLQMS GILQTINKLR FYNRSSGVIS EILLSDESWQ SKIDIPEEIL 360 ALTENNDMSR RTEPRPGLKL LTSSADESNK RHSQSVSTSS ILLLKTEIKE TNYLIFSLLL 420 LAAVSHSFAS EVPCQRTGDE NKQRRKVQLV DQPDSKAAGR SVQVARAGPS NQSRPMSADD 480 IQKAKMRAMF MQNKYGKSDV STPENLGQKS VNREISSAQI IKTTPSSRIA QLPHTKXNED 540 KKPLIPIRKP SPVKMETDSK PNKTSREHLL ERLKSVRTQW HSPPEVKINS LWRVGAGENS 600 KEVEVQTART XREKETLYAN QQEVPPNPKE PWDTEMDFDD SLTTEIPIEQ PPEVDIPESS 660 SSSLPNGIIQ ASKVEVLPTA TSLAPAINNA PPEADMELLA VLLKNPELVF ALTSGQTSNM 720 TSHQTVALLD MLKKSGVGFA QSSREIQEPT SLPSPTPPSE SRSEWRSEPS PFTRNPPQLL 780 QPPHVPAVVL TMPQLTVTTN LNPTTTPQNH TLMNHQAYKQ LPAATMYAQQ SSNTSAYHSS 840 LAQMHNASXS LLNSTMPTWL PSSVAPSTHF DANQYNHRMY SASQGQMNAV RNNAELYSNR 900 GLPDSRREHG PSYRPEWPAN WNPGEHRDWQ NRPSDAGRRG RDRDWR

Sequence ? help Back to Top

Protein Sequence Length: 946 aa Download sequence

MLGSEMAIVP AISADGSFAE LEGVGDSVES FVRLLETQKE LFHIQIDQLQ KLVVTQCKLT  60
GANPLSQEMA AGALSIKIGK KPRDLLNPKA VKYMQSIFSI KDAIGKKETR EISALCGITV  120
TQVREFFAGQ RSRVRKLTRV SREKVTQSEA SKEPLDVCPI SVEQPLPVAI EAPASLNTVN  180
PMTVQHCQVL ENYGNANATE GGQQVPVNST EVKTAQEGAS CLPQEEAIDG IDSEDKKFLE  240
NIFNLMKKEE TFSGQAKLME WVLQIQNIAV LNWFLTKGGI PILASWLSEA ALEEQSSLLL  300
VLLKVLCHLP LHKVLPLQMS GILQTINKLR FYNRSSGVIS EILLSDESWQ SKIDIPEEIL  360
ALTENNDMSR RTEPRPGLKL LTSSADESNK RHSQSVSTSS ILLLKTEIKE TNYLIFSLLL  420
LAAVSHSFAS EVPCQRTGDE NKQRRKVQLV DQPDSKAAGR SVQVARAGPS NQSRPMSADD  480
IQKAKMRAMF MQNKYGKSDV STPENLGQKS VNREISSAQI IKTTPSSRIA QLPHTKXNED  540
KKPLIPIRKP SPVKMETDSK PNKTSREHLL ERLKSVRTQW HSPPEVKINS LWRVGAGENS  600
KEVEVQTART XREKETLYAN QQEVPPNPKE PWDTEMDFDD SLTTEIPIEQ PPEVDIPESS  660
SSSLPNGIIQ ASKVEVLPTA TSLAPAINNA PPEADMELLA VLLKNPELVF ALTSGQTSNM  720
TSHQTVALLD MLKKSGVGFA QSSREIQEPT SLPSPTPPSE SRSEWRSEPS PFTRNPPQLL  780
QPPHVPAVVL TMPQLTVTTN LNPTTTPQNH TLMNHQAYKQ LPAATMYAQQ SSNTSAYHSS  840
LAQMHNASXS LLNSTMPTWL PSSVAPSTHF DANQYNHRMY SASQGQMNAV RNNAELYSNR  900
GLPDSRREHG PSYRPEWPAN WNPGEHRDWQ NRPSDAGRRG RDRDWR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-106	HB-other family protein

Link Out ? help Back to Top
Ensembl	Dr07006.1