PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr07013.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family ERF
Protein Properties Length: 270aa    MW: 30096.7 Da    PI: 4.813
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr07013.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.81.2e-173787155
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               s++ GVr+++ +gr++AeIrdp++   + r++lg+f+ta eAa a+++a+ +l+g
  Dr07013.1 37 SRFLGVRRRP-WGRYAAEIRDPNT---KERHWLGTFDTAHEAALAYDRAAISLKG 87
               6788******.**********933...5***********************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    
MSNNPTHYHH LSLPLSSTPA ATQRRGRRRS TTSTDTSRFL GVRRRPWGRY AAEIRDPNTK  60
ERHWLGTFDT AHEAALAYDR AAISLKGFQA KTNFIYFSSS SCSPSPCPPP PPPPPPQVSQ  120
PDHIVAPLPC DDDHGSIGLD LPAEFDFYSH AKSGYLSSII PEGYLLSSSS SSTDHKKYTP  180
TQEQQQLQQQ QQQQQQVNSN EDNIVSLDEA MVGGNXDING GMWDDVVEEP LWELSTTAWD  240
AMQQEQTATA STSYNSCMDG FLDLDYYSLF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.16e-33ERF family protein