PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr07038.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

CO-like

Protein Properties

Length: 461aa MW: 50128.8 Da PI: 5.1698

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr07038.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.9	3.7e-07	104	147	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg....Htvvpl 42 + C+++ ++++ C + +++lC++C + H++ H+++p+ Dr07038.1 104 ALLCDTCRTARATILCASHNSMLCPNCDFDAHQDaaqqHDRRPV 147 678*****************************879999998875 PP
2	CCT	57.7	4e-20	377	421	1	45
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 R+ l+RYkeKrk R+++K irYesRK++A+sR R+KGrF+k+++ Dr07038.1 377 RDSVLSRYKEKRKARRYDKLIRYESRKVRADSRVRIKGRFAKANQ 421 77889*************************************875 PP

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence
MMSSLPVPSL DSTFIQSPSS EDEAPLTTTR SKKTMGEEAA TATATETATE TTVAEKEAGS 60 GGACEFCGEA PALVHCRADS ARLCLACDRH VHAANTVSSR HSRALLCDTC RTARATILCA 120 SHNSMLCPNC DFDAHQDAAQ QHDRRPVEPF SGCPTAVELV DVLGVGGDGK EIGGGGDEGF 180 GEDGWVWEAQ PILSLEDYIV PTTSCHGFQA LGFAPLNKNR KAACGKHREE ILRQLRELMK 240 SESYVATDCW QQESAVEFIP MEQEQILQEG NMEFNLNQDT TCFNVPTYEV NFFQWDHSDN 300 HDLTHTVAFP FEQFTGSSLI ANHTKTEEAG DIDASANQVS GSGDGGGGGG ESGDAIIKDK 360 ILSLPKRSGY DLALPDRDSV LSRYKEKRKA RRYDKLIRYE SRKVRADSRV RIKGRFAKAN 420 QAEKRRLMDV SSKNIKVAAE GKNIKAADVI AVENTAPVEG S

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence

MMSSLPVPSL DSTFIQSPSS EDEAPLTTTR SKKTMGEEAA TATATETATE TTVAEKEAGS  60
GGACEFCGEA PALVHCRADS ARLCLACDRH VHAANTVSSR HSRALLCDTC RTARATILCA  120
SHNSMLCPNC DFDAHQDAAQ QHDRRPVEPF SGCPTAVELV DVLGVGGDGK EIGGGGDEGF  180
GEDGWVWEAQ PILSLEDYIV PTTSCHGFQA LGFAPLNKNR KAACGKHREE ILRQLRELMK  240
SESYVATDCW QQESAVEFIP MEQEQILQEG NMEFNLNQDT TCFNVPTYEV NFFQWDHSDN  300
HDLTHTVAFP FEQFTGSSLI ANHTKTEEAG DIDASANQVS GSGDGGGGGG ESGDAIIKDK  360
ILSLPKRSGY DLALPDRDSV LSRYKEKRKA RRYDKLIRYE SRKVRADSRV RIKGRFAKAN  420
QAEKRRLMDV SSKNIKVAAE GKNIKAADVI AVENTAPVEG S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47890.1	3e-61	CO-like family protein

Link Out ? help Back to Top
Ensembl	Dr07038.1