PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr07106.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MYB

Protein Properties

Length: 251aa MW: 28548.4 Da PI: 6.5116

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr07106.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.4	3.8e-14	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W+++Ed++l d++ ++G +W++++ g++R +k+c++rw +yl Dr07106.1 15 KGLWSPDEDQRLNDYILKHGHSCWSAVPINAGLKRNGKSCRLRWINYL 62 678***************************9***********97 PP
2	Myb_DNA-binding	52.1	1.5e-16	68	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +++eE + +++++++lG++ W+ Ia +++ gRt++++k++w+++l Dr07106.1 68 RGLFSAEEKQTILNLHALLGNK-WSQIATHLP-GRTDNEIKNYWNTHL 113 7889****************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence
MGCKACEKPK IVYRKGLWSP DEDQRLNDYI LKHGHSCWSA VPINAGLKRN GKSCRLRWIN 60 YLRPGLKRGL FSAEEKQTIL NLHALLGNKW SQIATHLPGR TDNEIKNYWN THLKKKFQIK 120 DKESETNASP ICTTTSPKES ITEYYEPNSS LKSLEVPLMD QLADKTMPRV LFADWLDVDL 180 SSTNKNDHAV RSSWRSSNAD GPIKAEGLLG FGEVEILGEL ALMQFDDGYE LMGSEFFDLS 240 QMDEICDSFV Q

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52260.1	2e-57	MYB family protein

Link Out ? help Back to Top
Ensembl	Dr07106.1