PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr07286.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

HD-ZIP

Protein Properties

Length: 251aa MW: 27826.5 Da PI: 8.5083

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr07286.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.9	7.4e-18	99	153	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k Dr07286.1 99 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKHLNLRPRQVEVWFQNRRARTK 153 788899***********************************************98 PP
2	HD-ZIP_I/II	128.4	2.9e-41	99	189	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk Dr07286.1 99 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKHLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELAELR-ALK 189 69*************************************************************************************9.555 PP

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence
MELGLSLGFG GCSSAPPVQL ELLPMEPVLR DQCSSQLALQ WLPNNSRNLE ILTTRGFDVN 60 RTPATETESE TALAPASPNN SAGSSHQLER DEDENSLSRK KLRLSKEQSA FLEESFKEHN 120 TLNPKQKLAL AKHLNLRPRQ VEVWFQNRRA RTKLKQTEVD CEYLKRCCET LTEENRRLHK 180 ELAELRALKA TAAHPLLAHL PATTLSMCPS CERVSSSSTT SGAGVKPSTP PFSHLSKARF 240 FPFAAHPSAA S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	98	104	SRKKLRL
2	148	156	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	5e-57	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	Dr07286.1