PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr07381.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

HD-ZIP

Protein Properties

Length: 192aa MW: 21838.6 Da PI: 4.5211

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr07381.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62	8.8e-20	25	78	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++e ++eLe+ Fe +++++ e++++LA +lgL+ rqV vWFqNrRa++k Dr07381.1 25 KKRRLEAEKVRELERSFEAQSKLDPERKARLACELGLEPRQVAVWFQNRRARWK 78 5668999**********************************************9 PP
2	HD-ZIP_I/II	110.9	8.3e-36	24	112	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 ekkrrl++e+v+ LE+sFe+++kL+perK++la eLgl+prqvavWFqnrRAR+k k+lE+d++++++a dal+ + ++L++e+++L+ Dr07381.1 24 EKKRRLEAEKVRELERSFEAQSKLDPERKARLACELGLEPRQVAVWFQNRRARWKVKRLERDFSSMRAARDALELDVSALRRETSALAL 112 69**********************************************************************************99974 PP

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence
MGFEEEEDEE EIGEDAYGGG APPEKKRRLE AEKVRELERS FEAQSKLDPE RKARLACELG 60 LEPRQVAVWF QNRRARWKVK RLERDFSSMR AARDALELDV SALRRETSAL ALEAAELRAK 120 LTARLSLGSP AEKPPAGEGI SPPLEQMIAV GLERKSISSE EYEPLDCAVK KGLFYEEELM 180 DYGWSLGCYE EW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	50	56	ERKARLA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	1e-28	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	Dr07381.1