PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr07405.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family C2H2
Protein Properties Length: 397aa    MW: 45306.1 Da    PI: 7.3414
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr07405.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.00014325347123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                + C +Cgk F  + + ++H +++
  Dr07405.1 325 FMCRKCGKAFAVRGDWRTHEKNC 347
                89*****************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    
MPTPKEIARK LRDGVQDRVR EIEVGHKIHW KREDIGVKKN NSISLGNKER GEDDEEEEAH  60
LNKHHPFSSA ATLTYHFYTI PPPPSPPLRE ALPLLTLSPT RPSSRFQTTS LHPNINGQQD  120
YYEEGEDDDD DDDEDDDQHQ HRRRRRQQQQ QQZDEDEEAV TVALHIGLPS LSRTASDLIS  180
RLNSSSSTTT TPTLSMTEDP KQGPPHPHPP PPPPPLIGGR LHKGQYWIPT PSQILIGPTQ  240
FSCPVCCKTF NRYNNMQMHM WGHGSQYRKG PESLRGTQPT AMLRLPCYCC APGCRNNIDH  300
PRSKPLKDFR TLQTHYKRKH GIKPFMCRKC GKAFAVRGDW RTHEKNCGKL WYCSCGSDFK  360
HKRSLKDHIK AFGHGHGALG IDCFDEDDEP SSEIEQD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-125C2H2 family protein