PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr07436.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family M-type_MADS
Protein Properties Length: 192aa    MW: 21776.9 Da    PI: 8.9563
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr07436.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.41.2e-1553101250
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
     SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 
                 i++k +r++tf kR + + KKA+ELS+LCd+ v  + ++ +g+++ ++
  Dr07436.1  53 LIQDKKQRSITFRKRFESVKKKAFELSILCDVPVMFMFIGLDGQMHVWP 101
                699********************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    
MPVLKIRPEI PILAVFAFAS LPLLPLSSGS RTEDQKVLIL NLKMGRAKLP LKLIQDKKQR  60
SITFRKRFES VKKKAFELSI LCDVPVMFMF IGLDGQMHVW PEDRNMVLGI ADRLQQLKKK  120
DRRRXCEXSL SECLPGKINX TEADLHQEIP MPLPQPLMSA SSDIFGEPYL QFDDFFGGNL  180
AFGEGCSSSY FS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10140.23e-11MIKC_MADS family protein