PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr07528.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MYB

Protein Properties

Length: 317aa MW: 35165.9 Da PI: 6.3428

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr07528.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	63.1	5.5e-20	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lvd+++++G g+W++ ++ g++R++k+c++rw +yl Dr07528.1 14 KGPWTPEEDQKLVDYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	56.3	7.4e-18	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++ +++++ lG++ W++Ia +++ gRt++++k++w+++l Dr07528.1 67 RGKFSPEEEQTILNLHSILGNK-WSAIATHLP-GRTDNEIKNFWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence
MGRSPCCDEN GLKKGPWTPE EDQKLVDYIQ KHGHGSWRAL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF SPEEEQTILN LHSILGNKWS AIATHLPGRT DNEIKNFWNT HLKKKLIQMG 120 FDPMTHRPRT DFFATLPHLI ALANLKELVD NNPWDDHSMR LQAEAVQNAK LQYLQCLIQS 180 AAAMAGNSTT NSPSSIAAEL EPMSLLNSQM MTMPSMPSAP APAAVHLPEL QIPSSFEQQQ 240 PLSNETNHQE SSFIVFSQGE NSTPRTPLIS PLSLPPLTDI SISNPGDACS TSSCGDGGAM 300 PFWPELLLDE PFLTEFA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	1e-110	MYB family protein

Link Out ? help Back to Top
Ensembl	Dr07528.1