PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr07796.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MYB

Protein Properties

Length: 560aa MW: 61573.8 Da PI: 5.6033

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr07796.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.8	1.8e-16	38	85	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +lvd+v++ G g+W+++ ++ g+ R++k+c++rw ++l Dr07796.1 38 KGPWTSAEDAILVDYVRRNGEGNWNSVQKHSGLARCGKSCRLRWANHL 85 79******************************************9986 PP
2	Myb_DNA-binding	27.2	8.7e-09	91	146	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...........TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...........kgRtlkqcksrwqk 46 +g+ +++E++l+++++ ++G++ W++ a++ gRt++++k++w++ Dr07796.1 91 KGPISPDEEKLIIELHXRMGNK-WARMAAHSIvkkadlvflqnIGRTDNEIKNFWNT 146 6889****************.****9*****999*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 560 aa Download sequence
MSAEAMMANE QIGSPSLSIE DACGSGGSPS SGGSTMKKGP WTSAEDAILV DYVRRNGEGN 60 WNSVQKHSGL ARCGKSCRLR WANHLRPNLK KGPISPDEEK LIIELHXRMG NKWARMAAHS 120 IVKKADLVFL QNIGRTDNEI KNFWNTRIKR RQRAGLPLHP PPLCFQASNY SQNNHTENEF 180 SSHNKEKNEK PIDIPXFMFD NLKGNRGYVP YTPPFPENSA RRLVAQGYGS QQLGLMNQVT 240 NHLTQLREPE PLFPGFHGNF TNGLLRLDQL SDLSRNVYRT LGTVCPSDPN PNCIKPGFFE 300 SSISGSHALL NGTFSASKSS TEAALKLELP SFQCPEMDSS SWLAYPSTPL QTIEXHAQNP 360 PADPQVKSDC VSPHNSGLLQ ELIHQANTLC NSNNQPSSRS SNCSTPLPSG IMESSIVGSC 420 ETSMEEFSDP ISPLGHSAAY IFSESTTPTS GFLVNELPPS KAAFGAYQAQ ATAENRRTPN 480 IGNNETLPNF SRPDTSLETD WLEDSVETEE SKFILNNALA TLLSDDFYGE LNNTPMETSS 540 MLDSGAELDS CLWNNMPNFQ

Sequence ? help Back to Top

Protein Sequence Length: 560 aa Download sequence

MSAEAMMANE QIGSPSLSIE DACGSGGSPS SGGSTMKKGP WTSAEDAILV DYVRRNGEGN  60
WNSVQKHSGL ARCGKSCRLR WANHLRPNLK KGPISPDEEK LIIELHXRMG NKWARMAAHS  120
IVKKADLVFL QNIGRTDNEI KNFWNTRIKR RQRAGLPLHP PPLCFQASNY SQNNHTENEF  180
SSHNKEKNEK PIDIPXFMFD NLKGNRGYVP YTPPFPENSA RRLVAQGYGS QQLGLMNQVT  240
NHLTQLREPE PLFPGFHGNF TNGLLRLDQL SDLSRNVYRT LGTVCPSDPN PNCIKPGFFE  300
SSISGSHALL NGTFSASKSS TEAALKLELP SFQCPEMDSS SWLAYPSTPL QTIEXHAQNP  360
PADPQVKSDC VSPHNSGLLQ ELIHQANTLC NSNNQPSSRS SNCSTPLPSG IMESSIVGSC  420
ETSMEEFSDP ISPLGHSAAY IFSESTTPTS GFLVNELPPS KAAFGAYQAQ ATAENRRTPN  480
IGNNETLPNF SRPDTSLETD WLEDSVETEE SKFILNNALA TLLSDDFYGE LNNTPMETSS  540
MLDSGAELDS CLWNNMPNFQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06100.3	9e-72	MYB family protein

Link Out ? help Back to Top
Ensembl	Dr07796.1