PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr07865.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family HD-ZIP
Protein Properties Length: 250aa    MW: 27961.8 Da    PI: 9.4977
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr07865.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-18106160256
                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                +k+ ++tk+q   Lee F+++ +++ ++++ LAk+l+L  rqV vWFqNrRa+ k
  Dr07865.1 106 KKKLRLTKDQSALLEERFKEHTTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTK 160
                678899***********************************************98 PP
2HD-ZIP_I/II117.67.2e-38106195191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rl+k+q++lLEe F+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E d+e Lkr++++l++en+rL++ev+eL+ +l
    Dr07865.1 106 KKKLRLTKDQSALLEERFKEHTTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTELDCELLKRRCETLNDENQRLQREVQELK-AL 195
                  59*************************************************************************************9.44 PP
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    
MDKGYGVCDT GLALGLGYKR KSTSLNQSFI SGMSSLEPML TLGLSGDPYG SPTMSKVFKE  60
STQSPVSSFS NANPRSIKSE EIIGEETGTE KVSPRGSDDD EEVCAKKKLR LTKDQSALLE  120
ERFKEHTTLN PKQKQALAKQ LNLRPRQVEV WFQNRRARTK LKQTELDCEL LKRRCETLND  180
ENQRLQREVQ ELKALKLKSP LFMQFLKTSP MICPACERIT GGDSPKGGPL MVAPPKHXFF  240
NPFTTHSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155163RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.11e-68HD-ZIP family protein