PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr07875.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

bHLH

Protein Properties

Length: 322aa MW: 35912.5 Da PI: 7.0878

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr07875.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.6	7.1e-11	166	214	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka++L + ++Y++sLq Dr07875.1 166 NSHSLAERVRREKISERMRLLQDLVPGC----NKITGKAMMLDEIINYVQSLQ 214 58************************....999***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence
MGAGDGDSNF MVEKKPVQLD SGMISANVYE QHFLASDWDP ILSMDNHAMS FDVSAGFSPY 60 IVGVSEQMPN LSFFSSKRHV PSTHLVDNNH QTETNLKWKK RKAVSNEFHI EVEQKKDGSP 120 ESAKSSKEKD EKKGKTSKHS KINTQNADAG KDDYIHVRAK RGQATNSHSL AERVRREKIS 180 ERMRLLQDLV PGCNKITGKA MMLDEIINYV QSLQRQVEFL SMKLAAVHPE VNFDIEQILS 240 KGILHSEDGN AAATLGFGPG MTTTHSHLHG VIQTDVRMCS MPNSQISPTA RIPNAWDHEL 300 QNIAPMSFID SKDLNGDMKV QI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	99	129	KKRKAVSNEFHIEVEQKKDGSPESAKSSKEK
2	99	135	KKRKAVSNEFHIEVEQKKDGSPESAKSSKEKDEKKGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10120.1	3e-57	bHLH family protein

Link Out ? help Back to Top
Ensembl	Dr07875.1