PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr07960.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

M-type_MADS

Protein Properties

Length: 621aa MW: 70059.5 Da PI: 5.2862

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr07960.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	97.2	6.9e-31	161	211	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gklyeyss Dr07960.1 161 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLYEYSS 211 79***********************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 621 aa Download sequence
MSLAMSDVDT QDFEPDXDDI VDVNEIVXNA KSQLVELYDS YXIRNSHIVP QVARKVVGQS 60 SSSGGESFRQ RQAKKKPRGS PFTELGLYLN TTFRFSEEIN XDMTFNILWL QXNGXPXLIL 120 SLXVKDIFAY SMSTVAXEQT FSTVLVSEKE KKIGRGSVQL KRIENKINRQ VTFSKRRSGL 180 LKKAHEISVL CDAEVALIVF STKGKLYEYS SEVQGREVEI EIDNREGIGX TXDTCYNGNV 240 EIEKEXLWCK SALPEGEPCN TSVGEKDWSS TGQPGLPGQQ GDGLILGPTP CDPDSSALPS 300 SSKPRLLFLH LLFFSSFHPC XMVQRKAPDE PQSHSHLVSH DVKSQCHAPP PSSNQQEAAQ 360 IKGGGNIKKT MMEKLITSTL PNYMKHTCSS GAKNSCSLKP SHSACNVCSY TYCCLNGHGR 420 HDELRRLPLK RFLSERRRLM NNKQDIELNS DFFIEIHNKP PQVKDIDVQS LEEVNVMMDF 480 PAYDSGSVSE SLEQTKIENE QLNEIEVDIE QEDEDGVMDA EPVHLTEFDN KRKSRNESQY 540 LQVESEPEAE KVDLKHLVMS ERRTAEEWMI DYALQEVVNK LGPARKSKVE LLVEAFEIIR 600 PXPECELPPK HAQQRPVQAR S

Sequence ? help Back to Top

Protein Sequence Length: 621 aa Download sequence

MSLAMSDVDT QDFEPDXDDI VDVNEIVXNA KSQLVELYDS YXIRNSHIVP QVARKVVGQS  60
SSSGGESFRQ RQAKKKPRGS PFTELGLYLN TTFRFSEEIN XDMTFNILWL QXNGXPXLIL  120
SLXVKDIFAY SMSTVAXEQT FSTVLVSEKE KKIGRGSVQL KRIENKINRQ VTFSKRRSGL  180
LKKAHEISVL CDAEVALIVF STKGKLYEYS SEVQGREVEI EIDNREGIGX TXDTCYNGNV  240
EIEKEXLWCK SALPEGEPCN TSVGEKDWSS TGQPGLPGQQ GDGLILGPTP CDPDSSALPS  300
SSKPRLLFLH LLFFSSFHPC XMVQRKAPDE PQSHSHLVSH DVKSQCHAPP PSSNQQEAAQ  360
IKGGGNIKKT MMEKLITSTL PNYMKHTCSS GAKNSCSLKP SHSACNVCSY TYCCLNGHGR  420
HDELRRLPLK RFLSERRRLM NNKQDIELNS DFFIEIHNKP PQVKDIDVQS LEEVNVMMDF  480
PAYDSGSVSE SLEQTKIENE QLNEIEVDIE QEDEDGVMDA EPVHLTEFDN KRKSRNESQY  540
LQVESEPEAE KVDLKHLVMS ERRTAEEWMI DYALQEVVNK LGPARKSKVE LLVEAFEIIR  600
PXPECELPPK HAQQRPVQAR S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60910.1	4e-30	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	Dr07960.1