PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr08110.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

C2H2

Protein Properties

Length: 264aa MW: 29856.3 Da PI: 7.2336

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr08110.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00023	96	115	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C+ C+k+F+r n++ H+ Dr08110.1 96 FCCHVCNKTFNRFNNMQMHM 115 78*****************9 PP
2	zf-C2H2	12.8	0.00036	180	202	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C+k F + + ++H +++ Dr08110.1 180 YSCRRCTKAFAVRGDWRTHEKNC 202 99*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence
MQEHYDQHDE DEAILELTLW PHGHHQNSSS ASSTSTTTCD GYMQDDKCCH EDVSVSLSIG 60 LSSIPNVGAN GLSSIATPSQ YWIPSAAEIL VGATQFCCHV CNKTFNRFNN MQMHMWGHGS 120 QFRKGSESLR RGQAPGTMRL PCYCCAEGCK NNIEHPRSRP LKDFRTLQTH YKRKHGVRPY 180 SCRRCTKAFA VRGDWRTHEK NCGKLWFCIC GSDFKHKRSL KDHVRSFGGG HGPHILESFK 240 VDEDEKEGTD GDDYGDEELN HSLM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	3e-94	C2H2 family protein

Link Out ? help Back to Top
Ensembl	Dr08110.1