PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr08215.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

TCP

Protein Properties

Length: 249aa MW: 26185.7 Da PI: 10.2881

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr08215.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	126.1	3.6e-39	62	145	2	85
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasns 85 a+++++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tgt++++as+ +a++s +++s Dr08215.1 62 APRRSSNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALNAAASAAPGAAS 145 7899*****************************************************************777444333333322 PP

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence
MDPKVSQEAP KFHQALGLPE NSKREPTTAA RASSAAPESS SLRTAMASAP QDKEETQKKQ 60 LAPRRSSNKD RHTKVDGRGR RIRMPALCAA RIFQLTRELG HKSDGETIQW LLQQAEPSII 120 AATGTGTIPA SALNAAASAA PGAASASAGL HQSFASLMGG RAHHGGLWPA QGAFLGQGAA 180 GGDAQLMQRI GLHGLEIPGG GMGPMSFASM LGGHVACSLR EESPNLLVQP DGLQYRCMLR 240 EKERLNLIS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	239	244	LREKER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	7e-43	TCP family protein

Link Out ? help Back to Top
Ensembl	Dr08215.1