PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr08296.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family C2H2
Protein Properties Length: 371aa    MW: 41123.9 Da    PI: 8.6681
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr08296.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.0003298120123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC +C+k +  +s+ k H + +
  Dr08296.1  98 WKCDKCSKKYAVQSDWKAHAKIC 120
                58*****************9987 PP
2zf-C2H211.40.001128146523
                TTTEEESSHHHHHHHHHHT CS
    zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                dCg+ Fsrk+++++H   +
  Dr08296.1 128 DCGTIFSRKDSFVTHRAFC 146
                8**************8765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    
MSTNTSDDES QSQSAHNLQP LIVASSAKKR RNLPGNPGKN IYIIVSLRSV NKRTNTEAKK  60
KVYVCPEPSC VHHDPSRALG DLTGIKKHYS RKHGEKKWKC DKCSKKYAVQ SDWKAHAKIC  120
GTKEYRCDCG TIFSRKDSFV THRAFCDALA EENCRTNHGI ASMVGSIQSQ TQDMFSHSMA  180
GLHSSSSSEQ STLSLNPLMS SGLLQLGGMN LGNSSAYMSA TALLQKAAEM GARVSDDSIS  240
PILLRGFTGY NNIINNNNIN SNSAYSELTQ FVENHGSCMV GLQGQVKRNN GELTGETRDG  300
RMTQDFLGIG TRTTAGSVSH GYVQDTAGLR YSDEQQQKQQ QQQQHDEVEM YSYHHQMAQR  360
TNTMEKPMWD F
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.19e-58C2H2 family protein