PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr08557.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family C2H2
Protein Properties Length: 415aa    MW: 44830.9 Da    PI: 10.2926
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr08557.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61.1e-05194215323
                ETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                C+ Cg++F+ +++L++H+   H
  Dr08557.1 194 CSECGEVFTKSESLEVHQIIrH 215
                ******************8877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    
MAINSSTPKF NIEAHKTQKK DNDKNMSMKK NKNKKVMKKK VISPPSPPRP HLRDHQVISS  60
WEQLKSILSC KAIVMASQVH DPSKEKPTVS NSNYAKLRSS CGPSICAFRD VVHGNXRVGH  120
RSDTDRHSGS SSPGASRRHE TAPLTRSSGG SCSSSSKAGG MPLRRLSGCY ECHAISIDSA  180
SRRYPRPRTT LSACSECGEV FTKSESLEVH QIIRHAVSEL GPEDSGRQIV EIIFKSSWHR  240
RALPACKIER ILKVRNSPRT VARFEEYRAA VKSRALNPKK HPRCAADGNE LLRFHPAILS  300
CALGSGSSLC SSPACGVCGI IRHGFAREAC GVRTTASSGR AHELGHAVGG VGSKAMMVCR  360
VIAGRVRRAG DEEDAGAGGS GYDSLAGADA NLEDLSVGNP RAILPCFVVI YRLVE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.13e-90C2H2 family protein