PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr08560.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family E2F/DP
Protein Properties Length: 457aa    MW: 50154.7 Da    PI: 6.9869
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr08560.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP82.92.6e-26159224171
    E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                r+++sL+llt+kf++ll+++e+g+++ln++a  L   dv  ++RRiYDi+NVLe+++liekk kn+i+wkg
  Dr08560.1 159 RYDSSLGLLTKKFINLLQQAEDGTLDLNKAAVVL---DV--QKRRIYDITNVLEGVGLIEKKLKNRIHWKG 224
                6899******************************...**..****************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    
MSGVEGSTTP QAQLRIPAFQ GSQILRAPPN RHFPPFAPSQ SFDHRIFPDP RGKSPIAFDK  60
DVISVAGVSC PRSTARPFNG DLEQKCKVDD HDVKGRKAVV IKKEVKDEID NHTTPPGSGT  120
GGKRHRKSKG SKQRKLSQQP SEVADVIPPN ALGSSSNCRY DSSLGLLTKK FINLLQQAED  180
GTLDLNKAAV VLDVQKRRIY DITNVLEGVG LIEKKLKNRI HWKGVNMTRP RELEDQVSAW  240
RSGVDTLRAE DSRLDGLISQ MQENLRLLKE DETNRKWLYL TKEDITSIPS FEDATLIAIK  300
APHGTSLEVP DPDGGIEFPH GRYQILLRSS MGPIDCYLLS NHEERLDSSN AVQQPEVEVC  360
SPSADGDGQG ISEQATTAVP NASSNCGCGG IVKIVPSDVD VSLWNSFITC LPSELLKLVT  420
KVQSSIPLQM DADYWLSSDV AFTKSRGINW VAQPMAA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.31e-77E2F/DP family protein