PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr08673.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MIKC_MADS

Protein Properties

Length: 250aa MW: 28859.6 Da PI: 9.3235

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr08673.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	100.1	8.4e-32	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gklye+ Dr08673.1 9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFG 58 79**********************************************95 PP
2	K-box	107.4	1.7e-35	81	171	9	99
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++++++++qe++kLk++ ++Lqr+qRhllGedL++L++keLqqLe+qLe++l + R++K++++l+q+eel+kke+ l ++nk+L++kle Dr08673.1 81 IGDHETQNWYQEVSKLKAKFDSLQRSQRHLLGEDLGPLNVKELQQLERQLESALAQARQRKTQIMLDQMEELRKKERHLGDINKQLKSKLE 171 67899************************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFGSS 60 GLSKTLERYQ RCCYNPQDLN IGDHETQNWY QEVSKLKAKF DSLQRSQRHL LGEDLGPLNV 120 KELQQLERQL ESALAQARQR KTQIMLDQME ELRKKERHLG DINKQLKSKL EAENSAFRAI 180 QGSWETEGVV PNHGFPVHHS QATAMETEPI LQIGYHHYVP TEVNMARNAN GENNNNNNNN 240 NTNFMHGWVL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45650.1	3e-99	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	Dr08673.1