PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr08718.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MYB

Protein Properties

Length: 243aa MW: 27520.9 Da PI: 5.4166

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr08718.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45	2.5e-14	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed++l+ + G +W+++++ g+ R++k+c++rw +yl Dr08718.1 14 KGPWTAAEDKKLISFILNNGQCCWRAVPKLAGLSRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	54.1	3.7e-17	69	111	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 T+ E++l +d++++lG++ W++Ia++++ gRt++++k++w+++ Dr08718.1 69 LLTESEEQLVIDLHARLGNR-WSKIAAKLP-GRTDNEIKNHWNTH 111 569***************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence
MGRQPCCDKL GVKKGPWTAA EDKKLISFIL NNGQCCWRAV PKLAGLSRCG KSCRLRWTNY 60 LRPDLKRGLL TESEEQLVID LHARLGNRWS KIAAKLPGRT DNEIKNHWNT HIKKKLLKMG 120 IDPVTHEPLN KSCSSSPSAP VETKTDDSRS QLIQVNERPD MLQSPSENNS SSNINGDDQD 180 SLPLPSYIWE EGDKPLIDES WSFTSNQEDF NSVIGLPTWE ENCEWLLDYQ DFSITDDFGL 240 NSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G22680.1	3e-85	MYB family protein

Link Out ? help Back to Top
Ensembl	Dr08718.1