PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr09353.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MIKC_MADS

Protein Properties

Length: 215aa MW: 24956.4 Da PI: 9.9592

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr09353.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	98.9	2.1e-31	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+ Dr09353.1 9 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYA 58 79***********************************************8 PP
2	K-box	113.5	2.1e-37	81	173	8	100
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 s +ea+++++qqe++kL+++i nLq+++R+l+Ge L+++sl++L+qLe++Lek+++kiRskKnell+++ie++qk+e elq++n++Lr+k++e Dr09353.1 81 SINEANSQYYQQESSKLRQQITNLQNSNRNLMGEALSTMSLRDLKQLENRLEKGISKIRSKKNELLYAEIEYMQKREMELQNDNMYLRNKIAE 173 47899*************************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence
MGRGKTEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFST RGRLYEYANN 60 SVRATIERYK KACSGTPNTG SINEANSQYY QQESSKLRQQ ITNLQNSNRN LMGEALSTMS 120 LRDLKQLENR LEKGISKIRS KKNELLYAEI EYMQKREMEL QNDNMYLRNK IAENERAQQT 180 LNMLPVTTTA AVYDLMPPFD SRNFLQVNLL DPNRH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18960.1	1e-106	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	Dr09353.1