PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr09452.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family B3
Protein Properties Length: 244aa    MW: 27776.3 Da    PI: 9.5091
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr09452.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B380.32e-25261161198
                HHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3  11 lksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                +k++rlv+pk++ae++      +   e++  l +ede g+ W+++++y+ +s++yvltkGW+++vk+++L++gD v+F+++   + ++++  +r
  Dr09452.1  26 GKLNRLVIPKQYAEKYfplaseS--GEKGLLLCFEDEGGKLWRFRYSYWTSSQSYVLTKGWSRYVKEKRLDAGDLVIFERTLA-GDRFFIACRR 116
                6889***************9643..457789************************************************5533.3333555554 PP
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    
VFISNVQRNF LSSISVPCKV RARFDGKLNR LVIPKQYAEK YFPLASESGE KGLLLCFEDE  60
GGKLWRFRYS YWTSSQSYVL TKGWSRYVKE KRLDAGDLVI FERTLAGDRF FIACRRRGSP  120
EEPSSSSAHN AWNQQSFYNS YNASSSMPSS YLYMSSMQQD CFVQRGGEQR SRSNNTVGVP  180
KTLRLFGVNL ECIPDETEDQ EQVVHSGMCF MDQNSVHRGR FMPGNASTSQ LLKRGRDMGG  240
GQKP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.21e-47B3 family protein