PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr09859.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

SBP

Protein Properties

Length: 393aa MW: 42756.8 Da PI: 6.8809

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr09859.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.7	2.2e-40	89	166	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +C v+gC++dls++++yhrrhkvCevhsk++ v+v g+eqrfCqqCsrfh l efDe krsCr+rL++hn+rrrk+q+ Dr09859.1 89 CCLVDGCKSDLSKCRDYHRRHKVCEVHSKTQIVMVGGQEQRFCQQCSRFHLLVEFDEVKRSCRKRLDGHNRRRRKPQP 166 6**************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence
MEWDLKMPSW DLADMEQNAE QGIVPVVAGP SSWPSNQDCS VDLKLGGLGD FGQADRWKVQ 60 PRVPAVPSAT TSSSSKRSRT PNNAGQIACC LVDGCKSDLS KCRDYHRRHK VCEVHSKTQI 120 VMVGGQEQRF CQQCSRFHLL VEFDEVKRSC RKRLDGHNRR RRKPQPDPLX AANLFTNHQG 180 IRFTSYPPLF PSATTPGGLA WPGIIKTEQD TMFIDQQSSS FISRQQNLPS SFYINFKEGK 240 KFPFLQDSEI ALGHRISLEA SGKIIPSSQS SSMKMLPDGI NHILDSEGAL SLLSSPVQTA 300 AINLSQMVPS DRIPVGQPLV SSLSYSGLGH YSGSQASSSV SPTGFSCSGI DDDHEGNILV 360 SDASDADLPC HGIFPVGGEG SSDGASQALP FWL

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence

MEWDLKMPSW DLADMEQNAE QGIVPVVAGP SSWPSNQDCS VDLKLGGLGD FGQADRWKVQ  60
PRVPAVPSAT TSSSSKRSRT PNNAGQIACC LVDGCKSDLS KCRDYHRRHK VCEVHSKTQI  120
VMVGGQEQRF CQQCSRFHLL VEFDEVKRSC RKRLDGHNRR RRKPQPDPLX AANLFTNHQG  180
IRFTSYPPLF PSATTPGGLA WPGIIKTEQD TMFIDQQSSS FISRQQNLPS SFYINFKEGK  240
KFPFLQDSEI ALGHRISLEA SGKIIPSSQS SSMKMLPDGI NHILDSEGAL SLLSSPVQTA  300
AINLSQMVPS DRIPVGQPLV SSLSYSGLGH YSGSQASSSV SPTGFSCSGI DDDHEGNILV  360
SDASDADLPC HGIFPVGGEG SSDGASQALP FWL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	147	164	KRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	1e-46	SBP family protein

Link Out ? help Back to Top
Ensembl	Dr09859.1