PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr09910.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

C3H

Protein Properties

Length: 451aa MW: 49034.1 Da PI: 7.5765

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr09910.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.4	2.9e-09	61	87	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C ++ rtG C++G +C+F+H+p Dr09910.1 61 PGEPDCAYYIRTGLCRFGMTCRFNHPP 87 5789*********************97 PP
2	zf-CCCH	35.8	1.3e-11	145	169	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+G++CkF+H++ Dr09910.1 145 EKECAYYLRTGQCKFGNTCKFHHPQ 169 579********************97 PP
3	zf-CCCH	39.2	1.2e-12	305	330	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ CkF+H++ Dr09910.1 305 DQPECQFYMKTGDCKFGAVCKFHHPR 330 689*********************96 PP
4	zf-CCCH	40.1	6.3e-13	350	376	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ Dr09910.1 350 PGEPLCIFYSRYGICKFGPNCKFDHPM 376 589**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence
MDYEGVGIQM HGGGVRGAVV AVAVAEGSAS AGATDIDEET LWQMNLRQSE SMESGLYPER 60 PGEPDCAYYI RTGLCRFGMT CRFNHPPNRK LMEVKSSDKV YLVLSSCALT DSAASCSSDF 120 FSAVAAARIK GGYPERVGQP ECQNEKECAY YLRTGQCKFG NTCKFHHPQP SNSMLSLRGS 180 PGYPSVHSPT TPGQQSYPGA ITNWPISRAS FIPSPRWQGP SSYAQLILPQ GLVQVPGWNA 240 YPGQLGSVSS PDSQQQSSGS NQYYGISRQN ETNVTQGTYP YHRSGSIPMG LYALQREHIF 300 PERPDQPECQ FYMKTGDCKF GAVCKFHHPR ERLIPAPNCL LSPMGLPLRP GEPLCIFYSR 360 YGICKFGPNC KFDHPMMYSP AAPTADVPVV RRLLGSSTGS PALTLTSEGP VEAGPGKSRR 420 LSLSESRQMA SGEENTEAEG SHTTSQVSSF S

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence

MDYEGVGIQM HGGGVRGAVV AVAVAEGSAS AGATDIDEET LWQMNLRQSE SMESGLYPER  60
PGEPDCAYYI RTGLCRFGMT CRFNHPPNRK LMEVKSSDKV YLVLSSCALT DSAASCSSDF  120
FSAVAAARIK GGYPERVGQP ECQNEKECAY YLRTGQCKFG NTCKFHHPQP SNSMLSLRGS  180
PGYPSVHSPT TPGQQSYPGA ITNWPISRAS FIPSPRWQGP SSYAQLILPQ GLVQVPGWNA  240
YPGQLGSVSS PDSQQQSSGS NQYYGISRQN ETNVTQGTYP YHRSGSIPMG LYALQREHIF  300
PERPDQPECQ FYMKTGDCKF GAVCKFHHPR ERLIPAPNCL LSPMGLPLRP GEPLCIFYSR  360
YGICKFGPNC KFDHPMMYSP AAPTADVPVV RRLLGSSTGS PALTLTSEGP VEAGPGKSRR  420
LSLSESRQMA SGEENTEAEG SHTTSQVSSF S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-123	C3H family protein

Link Out ? help Back to Top
Ensembl	Dr09910.1