PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr09936.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

bHLH

Protein Properties

Length: 516aa MW: 56010.4 Da PI: 6.0404

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr09936.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.9	8.4e-09	329	376	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Dr09936.1 329 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 376 8***********************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 516 aa Download sequence
MEKERFFSSA AMNWQRSEAM AAVEMNCGGG EELPAFLNIN WDQSVEQSAT AQLESALSSI 60 VSSPSSSHPP PVAAESVVIR ELIGRLGSIC NSGEISPPSH LNTSNCSHTP LSSPPKLNLS 120 MAEGRGGVPI PGNLFPPANF PPFAADPGFA ERAARYSCFS GRNYATLPGS QFGIPETGKL 180 SRVPSSQSLK VDVSPLEVEP RSKLTGRVSG PPTPMETELK SSQEASSVSG ESNSRKRKAA 240 SKGKGKETPL SSKVAEEEDG SAKRCKLGEI NRSAEKDGDV QLKTEQNDTT SNGNDNGDQK 300 QGKESNAKPP EPPKDYIHVR ARRGQATDSH SLAERVRREK ISERMKFLQD LVPGCNKVTG 360 KAVMLDEIIN YVQSLQRQVE FLSMKLATVN PRLDFNDMHQ NRGPLQHSFY PIESVPGAFS 420 YAYQPQQEAP LQSVVTNNAL ETHCSMNPLD SGLRRSLSMQ PPPSDGFADA ASQLCNFWED 480 DLQSVVQMGF GQNQEDAFSS QNFHGSLATS HMKIEL

Sequence ? help Back to Top

Protein Sequence Length: 516 aa Download sequence

MEKERFFSSA AMNWQRSEAM AAVEMNCGGG EELPAFLNIN WDQSVEQSAT AQLESALSSI  60
VSSPSSSHPP PVAAESVVIR ELIGRLGSIC NSGEISPPSH LNTSNCSHTP LSSPPKLNLS  120
MAEGRGGVPI PGNLFPPANF PPFAADPGFA ERAARYSCFS GRNYATLPGS QFGIPETGKL  180
SRVPSSQSLK VDVSPLEVEP RSKLTGRVSG PPTPMETELK SSQEASSVSG ESNSRKRKAA  240
SKGKGKETPL SSKVAEEEDG SAKRCKLGEI NRSAEKDGDV QLKTEQNDTT SNGNDNGDQK  300
QGKESNAKPP EPPKDYIHVR ARRGQATDSH SLAERVRREK ISERMKFLQD LVPGCNKVTG  360
KAVMLDEIIN YVQSLQRQVE FLSMKLATVN PRLDFNDMHQ NRGPLQHSFY PIESVPGAFS  420
YAYQPQQEAP LQSVVTNNAL ETHCSMNPLD SGLRRSLSMQ PPPSDGFADA ASQLCNFWED  480
DLQSVVQMGF GQNQEDAFSS QNFHGSLATS HMKIEL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	3e-69	bHLH family protein

Link Out ? help Back to Top
Ensembl	Dr09936.1