PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr10009.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family bHLH
Protein Properties Length: 375aa    MW: 40814.5 Da    PI: 6.7929
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr10009.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.56.6e-052643021255
                HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  Dr10009.1 264 RKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 302
                7788899*********998.....8******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    
MMDSSSNSDD HHDQDLHGSS SLPPPLLPSF HDSNQTFILN NGGFIQSNNG VIISTSRDSK  60
TLGFQPPLSS MVQELGFHWS NSNAPNYINQ SDSQMKDHDF SGSSSITEQL HMALTGVPPF  120
DISSSTGFAE STTSSSTACS RGNFSPVLPT SHTNISNQNH QVVSPLFPIS LGMDHLQANL  180
DVLASATKFG RSFSQCSLNN NMALFKEHSP SHELEHFQEP NQVLSNGYHN KISSLVPGAA  240
AVSQTVNKKP RMEQRSSFSP FKVRKEKLGD RIAALQQLVS PFGKTDTASV LMEAIGYIKF  300
LQDQVETLSV PYMRSSGNKK LKPMHGGALV CVEEKEEPKP DLRSRGLCLV PLSCTSYVTN  360
DNGGLWSPPN FRGGT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.11e-51bHLH family protein