PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr10076.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family LBD
Protein Properties Length: 253aa    MW: 26544.3 Da    PI: 7.4439
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr10076.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260128.33.4e-40391391100
     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ ++++eA+ar+rdPvyG+v++i++lqqq+ +l+ael++l++
  Dr10076.1  39 PCGACKFLRRKCVNGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPAHKRLDAVVTICFEAQARLRDPVYGCVAHIFDLQQQVVNLQAELSYLQA 138
                7***********************9989********************************************************************9998 PP

     DUF260 100 e 100
                +
  Dr10076.1 139 H 139
                6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    
MSGCTNSTSG SSSGGGGGGG XXXXXXXXGG XXGGGGGGPC GACKFLRRKC VNGCIFAPYF  60
DSEQGAAHFA AVHKVFGASN VSKLLLHIPA HKRLDAVVTI CFEAQARLRD PVYGCVAHIF  120
DLQQQVVNLQ AELSYLQAHL ATLELPSPPP PPPPPPLLAP SPFSISDLPF TSSPPTTLDL  180
STLFDPLNQP QLASQPVQQH GSSRDRSSLA DQISSGGGDL QALARELLHR HHHHHHHQHA  240
ASSQSEPASS LPK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.11e-63LBD family protein