PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr10087.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family C2H2
Protein Properties Length: 377aa    MW: 41286 Da    PI: 9.6515
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr10087.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.65.3e-06156178223
                EETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                 Cp Cg++F+  ++L+ H+ t H
  Dr10087.1 156 ACPECGEVFTKLESLELHQATkH 178
                6******************9988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    
MAITGFLPPT NQHQEKKNKK KKKKKKSQTK EISSWEQLKN ILSCKSTAPT GQQVHDPSKP  60
TTKPMTSYCG SSLCAIRDVV HGNTRVVHRA DTDHCSGCSS SPGSSWRHET VPLAVHLGSG  120
SRGGMQLRSL SGCYEAHAVS IESGSRRYPR SRALCACPEC GEVFTKLESL ELHQATKHAV  180
SELGAEDSGR NIVEIIFKSS WHRRRNLAAC MIERILKVHN NXRTLARFED YRAAVKSRWA  240
LNPKKHPRCA ADGNELLRFL PAPLSCSFRS TSLCSAAACG VCGIIRHGFA RGRSGIRTMA  300
SSGRAHEIGS AYEMGSRRAM MVCRVIAGRV KEAAAEEEEE MGGFDSLADD GANLEELFVG  360
NPKAILPCFV VIYRVLG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11624KKNKKKKKK
21925KKKKKKK
32026KKKKKKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.13e-99C2H2 family protein