PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr10088.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family E2F/DP
Protein Properties Length: 416aa    MW: 46521.9 Da    PI: 5.3652
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr10088.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP76.13.5e-24145204771
    E2F_TDP   7 rlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                +llt+kf++ll+++e+g+++ln +a+ L   +v  ++RRiYDi+NVLe+++liekk kn+i+wkg
  Dr10088.1 145 GLLTKKFINLLQEAEDGTLDLNRAADVL---EV--QKRRIYDITNVLEGVGLIEKKLKNQIHWKG 204
                589*************************...99..****************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    
MSRXKGTSLP QTQLRLSAFH GPQVLRTPPN RQFPLFSSDH RPSPAFDHRV FSDLCGKSPV  60
GAEKDLISIP PLAARQPNLD LKQKSGMEDH KVNAGGTISS KKETKNEASN HMLASGSGTA  120
GKRQRKPKSL KQRGIMQQTA ELAEGLLTKK FINLLQEAED GTLDLNRAAD VLEVQKRRIY  180
DITNVLEGVG LIEKKLKNQI HWKGVDMSKP KELDDQVSAL KSAVETLEAE DIQLDGMISD  240
MQESLRLLSA DENNQKWLYL SKEDIVNLPC FEDVMLIAVK APHGTCLEVP DPEEVGKPDH  300
FVNFTSWVDL DGLVFMXRVL NFRIDTTKFF NHEETFETSN HNKNNTSPSP NDRDKSGLEY  360
EKGRYQAVSG FSSDSVGSEE CVDGIMKIVP SDVDVDADYW LSSDARLCVT DQWRTE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.23e-72E2F/DP family protein