PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr10130.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MIKC_MADS

Protein Properties

Length: 242aa MW: 28142.9 Da PI: 7.5843

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr10130.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	85	4.5e-27	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien +nrqvt+skRr g++KKA+EL vLCdaev++i++sstgk+ ey+s Dr10130.1 9 KKIENPTNRQVTYSKRRLGLMKKAKELTVLCDAEVLIIMVSSTGKFAEYCS 59 68***********************************************96 PP
2	K-box	46.5	1.6e-16	136	190	34	88
K-box 34 eqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 e +++Ge+ e L ++eL+ Leq L++slk +R++K++++ +q+++ +kke + + Dr10130.1 136 EGNKRMGENTEGLAMEELRGLEQSLDESLKLVRNRKYHVISTQTDTYKKKEMRDE 190 55689**********************************************8755 PP

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence
MGRGKIEIKK IENPTNRQVT YSKRRLGLMK KAKELTVLCD AEVLIIMVSS TGKFAEYCSP 60 STEIKRMFDR YQQVSGVNLW SAQYEAMSCY FYFYFFFFFF FSLYPFGKVF YGVFFMGVEN 120 AQHSEASARN QPQPQEGNKR MGENTEGLAM EELRGLEQSL DESLKLVRNR KYHVISTQTD 180 TYKKKEMRDE SSEYVYLSEG HNNYEEELAL ANGASHLFAF QLQPNQPNLH GFRFNSHDLS 240 LA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54340.1	9e-42	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	Dr10130.1