PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr10254.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

Nin-like

Protein Properties

Length: 845aa MW: 96054.4 Da PI: 8.8106

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr10254.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83.1	2.8e-26	212	261	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i l dl+kyF+lpi++A+k+L+v+lTvLKr+CR+yGI RWPhRkiksl Dr10254.1 212 ASIALRDLEKYFNLPIAEASKKLKVGLTVLKRKCREYGILRWPHRKIKSL 261 6899********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 845 aa Download sequence
MTSPIQPPLH CRLLSALFVF KNNLNQELIR SVHVYKVCTE VGEEERRVER EFLFSPTSCL 60 EIHTPSFGHQ LLPGSTADIT KWRHQEGEAV GLWLCILAFD AAKPSTSSPI PPILCFSRNP 120 RLKSVQSLAS DLNKVFQLRG LQTQISGSSI LERTFTDENV VIANSRRHHQ DPISHSCFSV 180 MQQLSKDKEN GINLPETSVS IKKKRAATEH VASIALRDLE KYFNLPIAEA SKKLKVGLTV 240 LKRKCREYGI LRWPHRKIKS LDTLIHSVQE EVTRQELENK AAGAKAAARR KQMLESEKKC 300 IETTPFMELQ RETKLFRQDV FKRRHRAKAQ XKKSDDKHLR SPAAEDAVGG SGLYILSPAA 360 EAAIGVRPNC GLRHPFLRSS TSTSHGQSGG GKKGNAKHKR DNHPTNSCSH WLSTSDGSTX 420 MGPNPGIGDG RTNRMSIVAV TVHSPQKIRN SENPHGRVEI PQGGCPILAL XKPRFSPDFS 480 IFSLIFSSTF PHLWRRPRLG FGEALARLWR GLTAFDTAFP SEERYWGSFR RHRSGESIPC 540 CNTNHPIEKG YPNFLWNSDG QYWETPQEEC QKCEILRKDA LQLQKXLANF IEATDVXVQN 600 IETTLRCHEA SFKNLEHQXG RILDTLSKEQ QVFEQAIQVP YRNDVVVNDX EEXGEIXYIG 660 AENEKEEAEY HFEILECVNE DCACERXNFQ XDLLVSCSFQ AENTHEEVNP KVMEQAPLFG 720 IDQFTNCKKE ILGLGEDVGR RLKPSNDPLV LSLDNSQPKL FPWRPKRKHT PMWNFXTGVR 780 YRSKLIQRRH RGEDSPLEDX GACVCAFELL KKXQGRESAP VGLSWGVTRA WQQRHLLQQR 840 HQMXQ

Sequence ? help Back to Top

Protein Sequence Length: 845 aa Download sequence

MTSPIQPPLH CRLLSALFVF KNNLNQELIR SVHVYKVCTE VGEEERRVER EFLFSPTSCL  60
EIHTPSFGHQ LLPGSTADIT KWRHQEGEAV GLWLCILAFD AAKPSTSSPI PPILCFSRNP  120
RLKSVQSLAS DLNKVFQLRG LQTQISGSSI LERTFTDENV VIANSRRHHQ DPISHSCFSV  180
MQQLSKDKEN GINLPETSVS IKKKRAATEH VASIALRDLE KYFNLPIAEA SKKLKVGLTV  240
LKRKCREYGI LRWPHRKIKS LDTLIHSVQE EVTRQELENK AAGAKAAARR KQMLESEKKC  300
IETTPFMELQ RETKLFRQDV FKRRHRAKAQ XKKSDDKHLR SPAAEDAVGG SGLYILSPAA  360
EAAIGVRPNC GLRHPFLRSS TSTSHGQSGG GKKGNAKHKR DNHPTNSCSH WLSTSDGSTX  420
MGPNPGIGDG RTNRMSIVAV TVHSPQKIRN SENPHGRVEI PQGGCPILAL XKPRFSPDFS  480
IFSLIFSSTF PHLWRRPRLG FGEALARLWR GLTAFDTAFP SEERYWGSFR RHRSGESIPC  540
CNTNHPIEKG YPNFLWNSDG QYWETPQEEC QKCEILRKDA LQLQKXLANF IEATDVXVQN  600
IETTLRCHEA SFKNLEHQXG RILDTLSKEQ QVFEQAIQVP YRNDVVVNDX EEXGEIXYIG  660
AENEKEEAEY HFEILECVNE DCACERXNFQ XDLLVSCSFQ AENTHEEVNP KVMEQAPLFG  720
IDQFTNCKKE ILGLGEDVGR RLKPSNDPLV LSLDNSQPKL FPWRPKRKHT PMWNFXTGVR  780
YRSKLIQRRH RGEDSPLEDX GACVCAFELL KKXQGRESAP VGLSWGVTRA WQQRHLLQQR  840
HQMXQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	202	235	KKKRAATEHVASIALRDLEKYFNLPIAEASKKLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	2e-44	Nin-like family protein

Link Out ? help Back to Top
Ensembl	Dr10254.1