PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr10405.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

bHLH

Protein Properties

Length: 334aa MW: 38606.1 Da PI: 9.0598

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr10405.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.3	6.7e-09	116	160	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h + Er RR++i ++++ L +++ ++ +K +K +i++ A Y+k+L Dr10405.1 116 HMMKERLRRENISQCYADLHSIILPR-----PKADKNSIVQSAAVYLKEL 160 7799*******************7.....6*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence
MDPFSFQDEI MQLEDIYFPI FSPDPFAFIP IATETEIQSP ASVLLSKKER ADYIASCFVE 60 YSRAKDEHVR RNLELKSNEW RNIHGRVIEY LRKIPQPNNP KMKMSVKGNC SRLFRHMMKE 120 RLRRENISQC YADLHSIILP RPKADKNSIV QSAAVYLKEL LMIKEELHRQ NKMLRKKIID 180 TGNILQSKGL DSRTELEMKD DNMSIEETKI EVQLMNPVST MDSMIEALQC MKGMGVKAMS 240 IHSKVFGDEL ATVMTINTKV EKSEVRRAVE GNPVEMERKL RLQLQIVMAI AVIIAVVNTQ 300 GISANFSLDI GWLFLYTKDI YPPFVPVVNR LHRQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43650.1	2e-27	bHLH family protein

Link Out ? help Back to Top
Ensembl	Dr10405.1