PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr10407.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

bHLH

Protein Properties

Length: 272aa MW: 31428.3 Da PI: 10.1756

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr10407.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22	3e-07	115	159	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h + Er RR++i + L +++ ++ +K +K +i++ A Y+k+L Dr10407.1 115 HRMKERLRREKISQYXGDLHKIILPR-----PKADKNSIVQSAAAYLKEL 159 99*********************7.....6**************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence
MDPFSFQDEI MQLQDIDFST FSPDPFGLIP VTIQTNIQSS ASVLLSKKER ARCIAPCFVK 60 YSRSSGEHVR SLELKSSAQM NVHRRVFEYL RKIPKPYKPM TDTRVNKKNS ELFQHRMKER 120 LRREKISQYX GDLHKIILPR PKADKNSIVQ SAAAYLKELK TTKEDLYKQN KNLKERVDTE 180 NILLSKGLNL RTGHKMEDEN MKIDEAKINV QLMNPVSTID SMIKALQCMK EMGVIAMSIQ 240 SKFSEDESTT MMTINTKVFS QFLSVTLKFI SK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43650.1	1e-17	bHLH family protein

Link Out ? help Back to Top
Ensembl	Dr10407.1