PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr10503.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

C2H2

Protein Properties

Length: 462aa MW: 50475.9 Da PI: 9.4461

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr10503.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.3e-05	86	108	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Dr10503.1 86 FVCEICNKGFQRDQNLQLHRRGH 108 89*******************88 PP
2	zf-C2H2	12.3	0.00053	162	184	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ Dr10503.1 162 WKCDKCSKKYAVQSDWKAHSKTC 184 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 462 aa Download sequence
MSNITGGSFS SSGNIINGDQ DDDQQHPKTL INNGTSSSQQ SQQTPPPAPP PPSPAVKKKR 60 NLPGTPDPTA EVIALSPTTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRTST 120 EIKKRVYICP EVTCVHHNPN RALGDLTGIK KHFCRKHGEK KWKCDKCSKK YAVQSDWKAH 180 SKTCGTKEYK CDCGTIFSRR DSFITHRAFC DALTEENNNN NKGLLVPLPL QIPIPTENVN 240 NNTNKKQHHH ATLMAEFSPD LKNHLMSMPL IKPLTMAAAG PSSMIFSPHT DSSPPSSASL 300 QLGGSHSSAH MSATVLLQKA AQMGAMAASE NIIRSPPPHM LQNRSSSGMG MAGMAGLDMR 360 NLGVFHDQTN MKAGGEGGHX QLFYGGNINY KMGQREWEMM TVDYMGVDRG RSSSTTSSSV 420 HGFGHAFQCP VMGMHGHGHG HGHGHGHGHG QTGILEKTME DV

Sequence ? help Back to Top

Protein Sequence Length: 462 aa Download sequence

MSNITGGSFS SSGNIINGDQ DDDQQHPKTL INNGTSSSQQ SQQTPPPAPP PPSPAVKKKR  60
NLPGTPDPTA EVIALSPTTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRTST  120
EIKKRVYICP EVTCVHHNPN RALGDLTGIK KHFCRKHGEK KWKCDKCSKK YAVQSDWKAH  180
SKTCGTKEYK CDCGTIFSRR DSFITHRAFC DALTEENNNN NKGLLVPLPL QIPIPTENVN  240
NNTNKKQHHH ATLMAEFSPD LKNHLMSMPL IKPLTMAAAG PSSMIFSPHT DSSPPSSASL  300
QLGGSHSSAH MSATVLLQKA AQMGAMAASE NIIRSPPPHM LQNRSSSGMG MAGMAGLDMR  360
NLGVFHDQTN MKAGGEGGHX QLFYGGNINY KMGQREWEMM TVDYMGVDRG RSSSTTSSSV  420
HGFGHAFQCP VMGMHGHGHG HGHGHGHGHG QTGILEKTME DV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-100	C2H2 family protein

Link Out ? help Back to Top
Ensembl	Dr10503.1