PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr10602.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family M-type_MADS
Protein Properties Length: 190aa    MW: 21155.1 Da    PI: 4.9352
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr10602.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF33.36.3e-1112401442
               HHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
     SRF-TF 14 skRrngilKKAeELSvLCdaevaviifss 42
               + R  g+lKK  ELS+LC+++v+++ + +
  Dr10602.1 12 TTRSRGLLKKSMELSTLCGIDVCLLFYDP 40
               56999********************9865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    
MGMENQPKMN ITTRSRGLLK KSMELSTLCG IDVCLLFYDP SSSSTAPALT FPSDPSQVSR  60
ILSRYQSHTG RVKDETPKYL RRHPSEPEIV DSPDDMVVDC AEETAEKVIV CQTEQWIDGE  120
PIRALVDLVD EWVSEAEWIG SGKKKGMRSF SRREKALRSI AEDLDVMLCS VNNRILALLS  180
SSSLSLVSSV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02235.12e-08M-type_MADS family protein