PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr10859.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

LBD

Protein Properties

Length: 182aa MW: 20314.5 Da PI: 6.4863

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr10859.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	132.4	1.8e-41	26	125	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe++r da+s++vyeA ar+rdPvyG++gvi +l +q++ l+aela+++++ Dr10859.1 26 PCAACKLLRRRCTDKCVLAPYFPPTDPLKFTMAHRVFGASNIIKFLQELPESQRADAVSAMVYEASARMRDPVYGSTGVICHLLRQVSDLQAELAKAQAK 125 7***********************************************************************************************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence
MESTGTTITT LPNPSSSSNP VIILIPCAAC KLLRRRCTDK CVLAPYFPPT DPLKFTMAHR 60 VFGASNIIKF LQELPESQRA DAVSAMVYEA SARMRDPVYG STGVICHLLR QVSDLQAELA 120 KAQAKLLNIK AHKDCLMEFN CMEIMAKSPQ HQPQPLDNCN ISCDLFEAYP DPDPFWEPNL 180 WT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	5e-54	LBD family protein

Link Out ? help Back to Top
Ensembl	Dr10859.1