PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr10890.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MYB

Protein Properties

Length: 248aa MW: 28328.2 Da PI: 8.6923

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr10890.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.5	5.4e-17	11	58	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed +lv++v ++G ++W+ a+ g++Rt+k+c++rw +yl Dr10890.1 11 KGPWTEQEDMQLVCYVSLFGERRWDFLAKVSGLNRTGKSCRLRWVNYL 58 79********************************************97 PP
2	Myb_DNA-binding	53.6	5.2e-17	64	109	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr+T+ E+ l ++++ ++G++ W++Iar+++ gRt++++k++w++++ Dr10890.1 64 RGRMTPHEERLVLELHSRWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 109 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence
MVGVMKEETR KGPWTEQEDM QLVCYVSLFG ERRWDFLAKV SGLNRTGKSC RLRWVNYLHP 60 GLKRGRMTPH EERLVLELHS RWGNRWSRIA RKLPGRTDNE IKNYWRTHMR KKAQERRRNG 120 IMLSPTSSKT SSTSSSSSSS SSSSTTSSCC SSCLTTPPLK STQASGGEEM MKKECSLDEF 180 WKEIASTSEA VNGLSFEDCK DEVYGNICCY PPIPSPVCEY YSLWKIDEEE LRMFPPMGGP 240 PSHLTNMN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59780.3	1e-75	MYB family protein

Link Out ? help Back to Top
Ensembl	Dr10890.1