PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr11140.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family YABBY
Protein Properties Length: 183aa    MW: 20426.4 Da    PI: 8.6066
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr11140.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY217.34.8e-6721562170
      YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekl 101
                + + ++eqvCyv+Cn+CntilavsvP + +f++vtvrCG+Ct+ll+vn+  + q ++  +         l++++ + +en+++   ++++ ++   ++++
  Dr11140.1   2 SAQLAPEQVCYVHCNYCNTILAVSVPGNNMFNIVTVRCGYCTNLLAVNMGAMLQSIPLPN---------LQNNQINVSENIHMDSGSSSKCNRISMMNSM 92 
                567799*******************************************99999988776.........5566666666776666665555555555566 PP

      YABBY 102 senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                 +++++ +p     irPPekrqrvPsaynrfikeeiqrik+ nPdishreafsaaaknWahfP+ihfgl
  Dr11140.1  93 GSDHQRMLP-----IRPPEKRQRVPSAYNRFIKEEIQRIKSINPDISHREAFSAAAKNWAHFPNIHFGL 156
                666666655.....9****************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    
MSAQLAPEQV CYVHCNYCNT ILAVSVPGNN MFNIVTVRCG YCTNLLAVNM GAMLQSIPLP  60
NLQNNQINVS ENIHMDSGSS SKCNRISMMN SMGSDHQRML PIRPPEKRQR VPSAYNRFIK  120
EEIQRIKSIN PDISHREAFS AAAKNWAHFP NIHFGLTLDG NKEAKIDEVI TAQAAQKSSQ  180
GFF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.11e-69YABBY family protein