PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr11182.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

FAR1

Protein Properties

Length: 481aa MW: 52901.2 Da PI: 8.1274

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr11182.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	99.2	4.5e-31	53	146	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fYneYA +vGF +r+s ++s+++g+it r+fvCskeg+r++++++ +++ rr+ra+tr+gCka+++vkk+++g+w v+kle HnH+l+ Dr11182.1 53 FYNEYACRVGFGTRISVYQRSRKDGSITARQFVCSKEGFRTPRRNRdgregEVRPRRSRAVTRVGCKAMIRVKKQENGRWFVSKLEVAHNHDLV 146 9****************************************999999999999***********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence
MESMGSENGS DGAEEGGERG MPARSASMAL VLHEAREPCI GMEFESAEDA WGFYNEYACR 60 VGFGTRISVY QRSRKDGSIT ARQFVCSKEG FRTPRRNRDG REGEVRPRRS RAVTRVGCKA 120 MIRVKKQENG RWFVSKLEVA HNHDLVSPNL AHCHRSRRLL SESGRSPVFG FRGGRSLAPA 180 NGEVNQGLLT YHEVSEQSSG GGIGNGIVDC LKRMQMFEYC GILCRHILKV FSAANIQALP 240 SHYILKRWTR NARSEGENDS SNGLIAVEVN VESQDKDMGM PQSLTWRYNS LCREAMKFVE 300 DGATSPEIYS IALCALKEAV EKVAMAKQKD EKIEPADIVP NEMXVQPSRI ELQDTLXAVK 360 SVSSDKVGLV TFFNPLSEVA KTTVSQEFRQ KQPLEEGQLL QPPCNLLLVP TLPSSSHLLS 420 AAAPLALKTS NGNFDGSTPV LVSLSAGNIS KEDSNHGQAN SQPSPVHXCP CRTFLLSLIK 480 P

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence

MESMGSENGS DGAEEGGERG MPARSASMAL VLHEAREPCI GMEFESAEDA WGFYNEYACR  60
VGFGTRISVY QRSRKDGSIT ARQFVCSKEG FRTPRRNRDG REGEVRPRRS RAVTRVGCKA  120
MIRVKKQENG RWFVSKLEVA HNHDLVSPNL AHCHRSRRLL SESGRSPVFG FRGGRSLAPA  180
NGEVNQGLLT YHEVSEQSSG GGIGNGIVDC LKRMQMFEYC GILCRHILKV FSAANIQALP  240
SHYILKRWTR NARSEGENDS SNGLIAVEVN VESQDKDMGM PQSLTWRYNS LCREAMKFVE  300
DGATSPEIYS IALCALKEAV EKVAMAKQKD EKIEPADIVP NEMXVQPSRI ELQDTLXAVK  360
SVSSDKVGLV TFFNPLSEVA KTTVSQEFRQ KQPLEEGQLL QPPCNLLLVP TLPSSSHLLS  420
AAAPLALKTS NGNFDGSTPV LVSLSAGNIS KEDSNHGQAN SQPSPVHXCP CRTFLLSLIK  480
P

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	5e-30	FAR1 family protein

Link Out ? help Back to Top
Ensembl	Dr11182.1