PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr11248.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

bHLH

Protein Properties

Length: 443aa MW: 48757.4 Da PI: 5.5443

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr11248.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.8	1.5e-11	256	298	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +ErrRR+++N+++ Lr+++Pk + K++ a+iL A+eY+k+L Dr11248.1 256 LAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 298 68*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence
MLSHLNGSSW AEEENASAGA PWATQPSPTP AEPGSPTNLM SRFTKDELSL SLPSFKTMLE 60 DDWYFSSATA SSATPHFEPL QSQRQDXASL LPPLDSASSF SFAPKSSLSY IPFDPAFDLS 120 FTSSDLGVNS XDFSSKSQFS NPALVPNPVS FETIENSSTF NRSKTLQPLQ VFPSLGAQPT 180 LFQKRAALQR QNLGLDMDKA ASFRDLEGQE KDEDGSRMKW DSDEEDKNKE EKEGNGDGDG 240 VVEKGKKKGQ PAKNLLAERR RRKKLNDRLY MLRSVVPKIS KMDRASILGD AIEYLKELLR 300 RIDELHNELG TAPSSSAFPH STTMNFLPLT PATPTLPSRV KGELCTSSLA SPISQTPRVE 360 VRVREGRTVN IHMFCAQRPG LLLSTMRALD GLGLDIQQAV ISCFNGFALD VYHAEQCKDV 420 PRVMPEDIKT VLLNSAGLQT VMP

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence

MLSHLNGSSW AEEENASAGA PWATQPSPTP AEPGSPTNLM SRFTKDELSL SLPSFKTMLE  60
DDWYFSSATA SSATPHFEPL QSQRQDXASL LPPLDSASSF SFAPKSSLSY IPFDPAFDLS  120
FTSSDLGVNS XDFSSKSQFS NPALVPNPVS FETIENSSTF NRSKTLQPLQ VFPSLGAQPT  180
LFQKRAALQR QNLGLDMDKA ASFRDLEGQE KDEDGSRMKW DSDEEDKNKE EKEGNGDGDG  240
VVEKGKKKGQ PAKNLLAERR RRKKLNDRLY MLRSVVPKIS KMDRASILGD AIEYLKELLR  300
RIDELHNELG TAPSSSAFPH STTMNFLPLT PATPTLPSRV KGELCTSSLA SPISQTPRVE  360
VRVREGRTVN IHMFCAQRPG LLLSTMRALD GLGLDIQQAV ISCFNGFALD VYHAEQCKDV  420
PRVMPEDIKT VLLNSAGLQT VMP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	246	264	KKKGQPAKNLLAERRRRKK
2	258	265	ERRRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26744.1	1e-83	bHLH family protein

Link Out ? help Back to Top
Ensembl	Dr11248.1