PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr11354.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

C3H

Protein Properties

Length: 487aa MW: 54070.8 Da PI: 6.4019

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr11354.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35	2.4e-11	87	112	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +f+rtG C yG++CkF+H+ Dr11354.1 87 PGEPDCAYFLRTGLCGYGSKCKFNHP 112 5789*********************9 PP
2	zf-CCCH	27.7	4.7e-09	191	216	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f++rtG Cky ++C+F+H++ Dr11354.1 191 GEKECPFYLRTGCCKYSASCRFHHPE 216 7899********************96 PP
3	zf-CCCH	35.9	1.3e-11	380	404	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C++f++ G+Ck+G +CkF+H++ Dr11354.1 380 QPECQYFMKHGECKFGLSCKFSHPK 404 799********************96 PP
4	zf-CCCH	32.6	1.4e-10	425	450	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C ++ +G+CkyG+ CkF H++ Dr11354.1 425 DQPICAHYDMYGICKYGPACKFDHPM 450 5799********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence
MNAEISMEFS EEEAALGLEE DAVKACQSSP SPSSPETLVE QIENLKFDEE EKQRDEEKSE 60 GEFLDRESKI CDEGNEKSEG FRYPLRPGEP DCAYFLRTGL CGYGSKCKFN HPTTRNSLAQ 120 GIMWGPSETI QAGEGKETKA WLQGEGQLKC KYYSMPSGCK YGKSCKYGHR RENSGAEQVE 180 LNFLGLPIRP GEKECPFYLR TGCCKYSASC RFHHPEPVSV PANYLTARFE KDGYCQGLAS 240 GKSKSPKASF PLQRASVELS SSLDASSPSY IPRILLPHQV FHTSKLSTEY GEYQSYQVGS 300 ENIATIVVWS HRGAWMYETL LLMALRQEAE KAPAEAPFTP DSDWSKQETP ATDLDCHPPK 360 ADDLVHQHAQ TELYPERAGQ PECQYFMKHG ECKFGLSCKF SHPKTRCSKA SVAILSPLGL 420 PLRKDQPICA HYDMYGICKY GPACKFDHPM KFSHSPSTTA KSCTHSSSVD VPGAVKLSSG 480 SALLQQS

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence

MNAEISMEFS EEEAALGLEE DAVKACQSSP SPSSPETLVE QIENLKFDEE EKQRDEEKSE  60
GEFLDRESKI CDEGNEKSEG FRYPLRPGEP DCAYFLRTGL CGYGSKCKFN HPTTRNSLAQ  120
GIMWGPSETI QAGEGKETKA WLQGEGQLKC KYYSMPSGCK YGKSCKYGHR RENSGAEQVE  180
LNFLGLPIRP GEKECPFYLR TGCCKYSASC RFHHPEPVSV PANYLTARFE KDGYCQGLAS  240
GKSKSPKASF PLQRASVELS SSLDASSPSY IPRILLPHQV FHTSKLSTEY GEYQSYQVGS  300
ENIATIVVWS HRGAWMYETL LLMALRQEAE KAPAEAPFTP DSDWSKQETP ATDLDCHPPK  360
ADDLVHQHAQ TELYPERAGQ PECQYFMKHG ECKFGLSCKF SHPKTRCSKA SVAILSPLGL  420
PLRKDQPICA HYDMYGICKY GPACKFDHPM KFSHSPSTTA KSCTHSSSVD VPGAVKLSSG  480
SALLQQS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.2	2e-70	C3H family protein

Link Out ? help Back to Top
Ensembl	Dr11354.1