PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr11397.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

LBD

Protein Properties

Length: 176aa MW: 19013.7 Da PI: 7.8415

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr11397.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	145.5	1.5e-45	14	113	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrr+Ca+dCv+apyfpa+qp+kfa vhk+FGasnv kll++lp ++r+da+sslvyeA+ar+rdPvyG+vg i++lqqq++ l+++la +++e Dr11397.1 14 PCAACKLLRRRCAEDCVFAPYFPADQPHKFASVHKVFGASNVNKLLQELPVHHRSDAVSSLVYEANARVRDPVYGCVGAISSLQQQVDALQTQLAIAQAE 113 7**********************************************************************************************99986 PP

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence
MREVAGKRQG GGSPCAACKL LRRRCAEDCV FAPYFPADQP HKFASVHKVF GASNVNKLLQ 60 ELPVHHRSDA VSSLVYEANA RVRDPVYGCV GAISSLQQQV DALQTQLAIA QAEMLHIRMS 120 HTAYLARLGL TPAMSGSGGS SSGTSSPKLM EINEKPTYGL EMVVDQSTLD EPLWPC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	6e-65	LBD family protein

Link Out ? help Back to Top
Ensembl	Dr11397.1