PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr11636.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

bHLH

Protein Properties

Length: 320aa MW: 35806.3 Da PI: 6.749

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr11636.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.2	3.5e-14	111	162	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i A++++k+L+ Dr11636.1 111 QRMTHIAVERNRRKQMNDYLASLRRLMPPS---YVQRGDQASIIGGAINFVKQLE 162 79**************************...9*****************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence
MALEAVVFPQ DLPFAHNAKN ITNNYNFVAV AEEDTGVLIN GMHANWDHSS SSWSSSIFPE 60 TEDLLQVSLS PETSIKEHLH HRPVNGTELT GKQRKRRRVR SFKNKEEVEN QRMTHIAVER 120 NRRKQMNDYL ASLRRLMPPS YVQRGDQASI IGGAINFVKQ LEQLQQSLEA QKLIKQRCNN 180 GDFEGSTPFA DHFTFPQYSS ASSCNTDGTG NGTTTSSGIS NEIIAERRSA SADIEVTMVE 240 GHANIKILAK RRPKQLVKLI VGLHNLCLST LHLNVTAVEH FVLYCFSLKV EEECQCGTVD 300 DIATAVHHLV AEIQEQAELV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	94	98	RKRRR
2	95	99	KRRRV
3	112	123	RMTHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	6e-63	bHLH family protein

Link Out ? help Back to Top
Ensembl	Dr11636.1